AI Tools for Healthcare Professionals

AlphaXiv Paper Lookup

Look up any arxiv paper via alphaxiv.org to get a structured AI-generated overview instead of parsing raw PDFs.

2 minutes

Academic Literature Research

Search and analyze academic literature. Find papers, understand research methodologies, and synthesize academic findings for research projects.

Academic Research Assistant

Automate literature reviews with structured search strategies, abstract screening, citation management, methodology comparison, and research gap identification.

Adversarial QA Loop

Use a Critic + Fixer pattern where one agent finds issues (read-only) and another fixes them, with re-audits until quality passes. Prevents Claude from approving its own work.

Clinical Trial Emulator

Emulate published clinical trials against real-world EHR data using a structured pipeline — from protocol parsing through cohort assembly, effect estimation, and discrepancy diagnosis.

Comprehensive Excellence Review

Run 6+ specialized review agents in parallel across code quality, security, performance, accessibility, documentation, and style. Get a synthesized quality score with prioritized fixes.

Deep Research Coordinator

Orchestrate complex multi-source research projects — from question decomposition to source prioritization to final synthesis and recommendations.

Deploy Workflow Automation

Automate your deployment pipeline: build, test, lint, version bump, and deploy to any target. Includes pre-deploy checks, rollback handling, and post-deploy verification.

Data Analysis Pipeline

End-to-end data analysis workflow from exploration to publication-ready output. Explore, regress, visualize, and produce polished results.

Devil's Advocate Review

Challenge your designs and decisions with 5-7 targeted critical questions. Catches unstated assumptions, alternative approaches, and potential issues before you commit.

Domain Reviewer Framework

Build a custom reviewer for your specific domain using the 5-Lens Framework: terminology, methodology, precedent, limitations, and impact.

Git Commit Workflow

Structured approach to git commits with quality checks, meaningful messages, and proper staging. Never commit broken code.

Idea Catalyst

Find cross-domain research inspiration by decomposing problems, searching other fields, and synthesizing transferable insights.

Paper Figures to PowerPoint

Extract all figures, tables, and equations from a research paper PDF and generate a polished PowerPoint deck automatically.

Grant Proposal Reviser

Apply reviewer and collaborator feedback to grant proposal drafts with voice-consistent revisions, change tracking, and automatic backups.

Grant Proposal Writer

Generate first-draft funding proposals from structured inputs, project data, and donor intelligence with voice-consistent academic writing.

20 minutes

Self-Improvement Memory Loop

Create a persistent MEMORY.md that captures corrections and learnings with [LEARN] tags. Claude checks memory before making similar mistakes across sessions.

Session Logging Protocol

Automatically log design decisions, progress, and context at key moments. Create a searchable history of why things were done, not just what changed.

Verification Before Done

Never report a task as complete without actually verifying it works. Compile, render, test, or check every output before saying 'done'.

Scientific Adaptyv

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein ...

Scientific Alphafold Database

Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.

Scientific Anndata

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; f...

Scientific Arboreto

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships a...

Scientific Benchling Integration

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

Scientific Bindingdb Database

Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), compound (SMILES/name), or pathogen. Essential for drug discovery, lead optimization, polypharmacology analysis, and structure-activit...

Scientific Biopython

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation...

Scientific Biorxiv Database

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

Scientific Bioservices

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick singl...

Scientific Brenda Database

Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.

Scientific Cbioportal Database

Query cBioPortal for cancer genomics data including somatic mutations, copy number alterations, gene expression, and survival data across hundreds of cancer studies. Essential for cancer target validation, oncogene/tumor suppressor analysis, and p...

Scientific Cellxgene Census

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For ana...

Scientific Chembl Database

Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.

Scientific Clinical Decision Support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelin...

Scientific Clinical Reports

Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with t...

Scientific Clinicaltrials Database

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.

Scientific Clinpgx Database

Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.

Replication-First Coding

When working with existing code or papers, match the original exactly before extending. Verify against gold standard numbers to catch silent bugs.

Research Exploration Sandbox

Create a structured explorations/ folder for experimental work. Fast-track experiments without full rigor, then graduate successful ones to production code.

Research Ideation Generator

Generate research questions, hypotheses, and empirical strategies. Brainstorm ideas systematically with structured prompts that push beyond obvious approaches.

Scientific Clinvar Database

Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.

Scientific Cobrapy

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

Scientific Cosmic Database

Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.

Scientific Datamol

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns nati...

Scientific Deepchem

Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-t...

Scientific Deeptools

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

Scientific Depmap

Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validat...

Scientific Dhdna Profiler

Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how someone thinks, understand cognitive style, profile writing or speech patterns, compare thinking styles between people, asks 'wha...

Scientific Diffdock

Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.

Scientific Dnanexus Integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.

Scientific Drugbank Database

Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. This skill should be used when working with pharmaceutical data, d...

Scientific Ena Database

Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.

Scientific Ensembl Database

Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.

Scientific Esm

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein...

Scientific Etetoolkit

Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.

Scientific Fda Database

Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.

Scientific Flowio

Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.

Scientific Gene Database

Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.

Scientific Geniml

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or ...

Scientific Geo Database

Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.

Scientific Gget

'Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use bio...

Scientific Ginkgo Cloud Lab

Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run cell-free protein expression (validation or o...

Scientific Glycoengineering

Analyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated glycoengineering tools (NetOGlyc, GlycoShield, GlycoWorkbench). For glycoprotein engineering, th...

Scientific Gnomad Database

Query gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint scores (pLI, LOEUF), and loss-of-function intolerance. Essential for variant pathogenicity interpretation, rare disease genetics, and identifying loss...

Scientific Gtars

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics a...

Scientific Gtex Database

Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative trait loci), and sQTLs. Essential for linking GWAS variants to gene regulation, understanding tissue-specific expression, and interp...

Scientific Gwas Database

Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.

Scientific Histolab

Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatia...

Scientific Hmdb Database

Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.

Scientific Imaging Data Commons

Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, v...

Scientific Interpro Database

Query InterPro for protein family, domain, and functional site annotations. Integrates Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, and 11 other member databases. Use for protein function prediction, domain architecture analysis, evolutionary classi...

Scientific Iso 13485 Certification

Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing documentation, (2...

Scientific Jaspar Database

Query JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs). Search by TF name, species, or class; scan DNA sequences for TF binding sites; compare matrices; essential for regulatory genomics, motif analysis, and GWAS regulatory...

Scientific Kegg Database

Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work ...

Scientific Labarchive Integration

Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.

Scientific Lamindb

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking...

Scientific Latchbio Integration

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.

Scientific Matchms

Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification,...

Scientific Medchem

Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.

Scientific Metabolomics Workbench Database

Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.

Scientific Molecular Dynamics

Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces)...

Scientific Molfeat

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

Scientific Monarch Database

Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-speci...

Scientific Neurokit2

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patter...

Scientific Neuropixels Analysis

Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology....

Scientific Omero Integration

Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.

Scientific Openalex Database

Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publ...

Scientific Opentargets Database

Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.

Scientific Opentrons Integration

Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-v...

Scientific Pathml

Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide fo...

Scientific Pdb Database

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.

Scientific Phylogenetics

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family an...

Scientific Protocolsio Integration

Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; or...

Scientific Pubchem Database

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.

Scientific Pubmed Database

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.

Scientific Pydeseq2

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

Scientific Pydicom

Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel data from medical images (CT, MRI, X-ray, ultra...

Scientific Pyhealth

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, ...

Scientific Pylabrobot

Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, plate readers, pumps) or needing unified programming across different vendors. Best for complex workflows, multi-vendor setups, si...

Scientific Pyopenms

Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. Best for proteomics, comp...

Scientific Pysam

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Scientific Pytdc

Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.

Scientific Rdkit

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (w...

Scientific Reactome Database

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

Scientific Rowan

Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), ...

Scientific Scanpy

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For d...

Scientific Scikit Bio

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

Scientific Scikit Survival

Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradie...

Scientific Scvelo

RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for tra...

Scientific Scvi Tools

Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI). Best for advanced modeling, batch ef...

Scientific String Database

Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.

Scientific Tiledbvcf

Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.

Scientific Torchdrug

PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug discovery, protein modeling, or knowledge graph reasoning. Best for custom model development, protein property prediction, retrosy...

Scientific Treatment Plans

Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain...

Scientific Uniprot Database

Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniPro...

Scientific Uspto Database

Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, TSDR, for IP analysis and prior art searches.

Scientific Zinc Database

Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.

Iterative Build & Fix Loop

Run builds in a loop that automatically detects errors, fixes them, and re-runs until the build succeeds. Works with any build system: npm, cargo, go, make, gradle, and more.

Interactive Research Interview

Use Claude as an interviewer to formalize vague ideas into concrete specifications. Transform 'I have this intuition...' into a clear research plan.

Knowledge Base Builder

Build a structured knowledge base for your domain with notation registries, application databases, design principles, and anti-patterns.

20 minutes

Orchestrator Contractor Mode

Let Claude autonomously coordinate multi-step tasks like a contractor — planning, implementing, reviewing, fixing, and verifying without constant supervision.

Parallel Task Agents

Spawn multiple Claude agents simultaneously to handle independent subtasks. Review 3 papers at once, analyze multiple files in parallel, or run concurrent simulations.

Plan-First Workflow

Get Claude to plan before executing complex tasks. Prevents wasted effort by getting user approval on approach before writing code or making changes.

Literature Review Synthesis

Systematically search, analyze, and synthesize research literature. Extract key findings, identify gaps, and produce structured literature reviews.

Manuscript Referee Review

Get a thorough pre-submission review with referee-style objections. Identify weaknesses before reviewers do, and strengthen your paper proactively.

Multi-Agent Parallel Review

Run multiple specialized review agents in parallel — proofreader, code reviewer, security auditor, etc. Each agent focuses on one dimension with full attention.

Proofread Review Agent

Deploy a specialized proofreading agent that focuses solely on grammar, spelling, punctuation, and clarity. Catches errors that general reviews miss by having laser focus on language.

Quality Gates System

Implement a scoring system (0-100) that blocks commits below threshold. 80+ to commit, 90+ for PR, 95+ for excellence. Prevents shipping subpar work.

Data & Reporting(55)

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Chart & Data Visualization Designer

Design effective data visualizations and charts. Generate chart configurations for ECharts, Chart.js, and other libraries. Create dashboards and reports.

Data Analysis Validator

QA-review data analysis for methodology, accuracy, and presentation before sharing

Data Context Extractor

Extract company-specific data knowledge and generate tailored analysis templates

Data Question Analyzer

Answer data questions ranging from quick lookups to formal analytical reports

Data Visualization Creator

Create publication-quality data visualizations with matplotlib, plotly, or Chart.js

Dataset Explorer

Profile datasets to understand shape, quality, distributions, and key patterns

Spreadsheet Data Analyst

Analyze spreadsheet data, generate insights, create visualizations, and build reports from Excel/CSV data.

Data Extraction Assistant

Extract structured data from PDFs, Word docs, emails, and HTML using the unstructured library.

Data Pipeline Builder

Data pipeline and ETL automation - extract, transform, load workflows for data integration and analytics

Excel Automation Workflows

Automate Excel workflows including real-time control, VBA execution, and dashboard updates using xlwings.

Engagement Pattern Analyzer

Analyze which posts get saved vs liked vs replied to, find the patterns, and separate what your audience actually values from vanity engagement.

Funnel Metrics Analyst

Get a daily one-paragraph analysis of your funnel metrics — what moved, what's stalling, and what to do about it. An actual opinion, not a dashboard.

Interactive Dashboard Builder

Build self-contained HTML dashboards with Chart.js for data visualization

Automated Report Generator

Generate professional data reports with charts, tables, and visualizations

SaaS Metrics Dashboard

SaaS business metrics analysis - MRR, ARR, Churn, LTV, CAC, cohort analysis, and investor reporting

Google Sheets Automation

Google Sheets automation workflows - data sync, task management, reporting dashboards, and multi-platform integrations

Table Extraction from Documents

Extract tables from PDF documents with support for merged cells and multi-page layouts using camelot.

Weekly Report Generator

Create consistent, well-structured weekly status reports that communicate progress and plans effectively.

Excel File Manipulation

Create, edit, and manipulate Excel spreadsheets programmatically using openpyxl

KPI Variance Analysis & Commentary

Generate variance analysis commentary explaining why KPIs deviated from targets with root causes and corrective actions.

Report Automation Designer

Design automated reporting systems with data flow mapping, template creation, and delivery scheduling.

Survey Results Analyzer

Analyze survey responses to identify themes, segment insights, and generate executive-ready reports with visualizations.

Trend Identification & Forecasting Narrative

Identify trends in business data and generate forward-looking forecasting narratives with confidence levels and scenarios.

Scientific Dask

Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For...

Scientific Datacommons Client

Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets ...

Scientific Exploratory Data Analysis

Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically ...

Scientific Geomaster

Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, hyperspectral), vector...

Scientific Geopandas

Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operat...

Scientific Hypogenic

Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically explore hypotheses about patterns in empirical data (e.g., deception detection, content analysis). Combines literature insights with da...

Scientific Infographics

'Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and co...

Scientific Matplotlib

Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick stati...

Scientific Networkx

Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centra...

Scientific Plotly

Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations. For static publication figures use matplotlib or scientific-visualization.

Scientific Polars

Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacemen...

Scientific Pymc

Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.

Scientific Pymoo

Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.

Scientific Scientific Schematics

Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural net...

Scientific Scientific Visualization

Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-safe palettes, and specific journal formatting (Nature, Science, Cell). Orchestr...

Scientific Scikit Learn

Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building...

Scientific Seaborn

Statistical visualization with pandas integration. Use for quick exploration of distributions, relationships, and categorical comparisons with attractive defaults. Best for box plots, violin plots, pair plots, heatmaps. Built on matplotlib. For in...

Scientific Shap

Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force,...

Scientific Simpy

Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service operations, network traffic, logistics...

Scientific Statistical Analysis

Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for your data, assumption checking, power analysis, and APA-formatted results. Best for academic research reporting, test selection gu...

Scientific Statsmodels

Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and inference. Best for econometrics, time series, rigorous inference with coefficient tables. Fo...

Scientific Timesfm Forecasting

Zero-shot time series forecasting with Google's TimesFM foundation model. Use for any univariate time series (sales, sensors, energy, vitals, weather) without training a custom model. Supports CSV/DataFrame/array inputs with point forecasts and pr...

Scientific Torch Geometric

Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.

Scientific Umap Learn

UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.

Scientific Vaex

Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine ...

Natural Language SQL Writer

Write optimized SQL queries from plain English across multiple database dialects

Cohort & Segment Analysis

Perform cohort analysis and customer segmentation to identify behavioral patterns, retention trends, and high-value groups.

Customer Feedback Synthesizer

Synthesize customer feedback from multiple channels into actionable themes, sentiment analysis, and product insights.

Dashboard Narrative Generator

Transform dashboard data and KPI snapshots into compelling written narratives that explain the story behind the numbers.

Data Cleanup & Formatting

Clean, standardize, and validate messy data files — fix formats, remove duplicates, and get analysis-ready datasets.

Data Quality Assessment

Assess data quality across completeness, accuracy, consistency, and timeliness with remediation priorities.

Executive Summary Generator

Distill detailed reports into concise executive summaries with key findings, implications, and decision recommendations.

Personal Development(10)

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30-Day Goal Achievement Protocol

Build a personalized goal achievement system using cognitive behavioral techniques, identity reprogramming, and Reticular Activating System (RAS) programming.

30 minutes

Annual Life Audit

Create an honest assessment of where you are across life areas, identify patterns, and break focus areas into quarterly milestones and monthly actions.

DNA Health Analysis

Analyze raw DNA data from ancestry tests to identify health-related genetic variants you should discuss with your doctor.

Home Maintenance Tracker

Stay on top of home maintenance schedules, track service history, and manage improvement projects.

Personal OS & Life Tracker

Build a markdown-based personal operating system with daily logs, habit tracking, fitness data, task management, and automated daily reviews — all managed by Claude Code.

Personal Feedback Analyzer

Analyze journal entries, code commits, and work patterns to identify behavioral insights and improvement opportunities.

Local Business Reviewer

Build a personal database of local businesses with ratings, notes, and recommendations.

Nutritional Specialist

Get personalized nutrition advice with a persistent database that remembers your food preferences, allergies, dietary goals, and restrictions.

Mental Health Journal Assistant

A supportive journaling companion that provides prompts, helps identify patterns, and surfaces insights without judgment.

Recipe Development Lab

Track every version of a recipe with exact measurements, modifications, and lessons learned so you can actually recreate your best results.